سانچو:Infobox gene

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Infobox Gene documentation[نمائش] [سنواريو] [تاريخچو] [تطهير]

This is the Infobox gene template. The data in the infobox is sourced from wikidata. The lua implementation of this template is located at Module:Infobox_gene

Usage on a gene page[سنواريو]

Append {{infobox_gene}} to the top of a gene page. The infobox is populated via the Wikidata item of the page it resides on. To view which wikidata item is linked to a page, follow the "Wikidata items" link from the "Tools" menu to the left of the article.

Usage on a protein page[سنواريو]

Append {{infobox_gene}} to the top of a protein page. The infobox is populated by using the Wikidata item of the protein to find the encoded gene item and then uses the gene item to populate the infobox.

Usage on other pages[سنواريو]

Any page can display the infobox even if it does not have a gene or protein interwiki link. The Wikidata item must be explicitly added as a parameter and the underlying module is invoked. For instance, appending {{#invoke:Infobox_gene|getTemplateData|QID=Q414043}} to the top of any page will create an infobox for the gene RELN. QID is the wikidata gene item used to populate the infobox. Substitute the wikidata item id (QID) of interest as the QID parameter.

Error message[سنواريو]

"An Error has occurred retrieving Wikidata item for infobox" Indicates a non gene/protein Wikidata item or an incomplete Wikidata item.

Categories[سنواريو]

Including this template will automatically result in the addition of relevant categories based on the properties of the gene. These include Category:Human proteins and categories that correspond to the chromosome where the gene is located, such as Category:Genes on human chromosome 19. Other categories added manually to the article apart from the template will work as usual.

Data structure[سنواريو]

Basic network structure of the ProteinBoxBot wikidata project

Data structure of gene and protein data in Wikidata is a bit complex. Even if there is only one gene/protein article in Wikipedia, there are many data pages in Wikidata.

Basically Wikidata has distinct pages for gene and protein each, for respective species (See the table below). And pages are interconnected based on following rules.

  • Wikipedia articles are connected to Wikidata's gene data page (#Case A) or protein data page (#Case B) through d:Help:Sitelinks. In most cases, articles are connected to gene data page.
  • Gene and protein pages are interconnected through "encodes (d:P:P688)" and "encoded by (d:P:P702)" property claims (horizontal arrows "→", "←" in the table).
  • Gene pages from different species are interconnected through "ortholog (d:P:P684)" property claims (vertical arrows "↑", "↓" in the table).

The data which infobox_gene shows to readers are collected from somewhere of this interconnected Wikidata pages.

Case A[سنواريو]

In most cases, Wikipedia article page is connected to Human gene data page. For example, Sonic hedgehog.

Wikipedia
(Article)
Wikidata
(Gene)
Wikidata
(Protein)
Human Wikipedia article page
Sonic hedgehog
d:Help:Sitelinks
d:Help:Sitelinks
Human gene data page
SHH (d:Q14860072)
→encodes (d:P:P688)→
←encoded by (d:P:P702)←
Human protein data page
Sonic hedgehog (d:Q2477760)
↑   ↓
ortholog (d:P:P684)
↑   ↓
Mouse Mouse gene data page
Shh (d:Q14860079)
→encodes (d:P:P688)→
←encoded by (d:P:P702)←
Mouse protein data page
Sonic hedgehog (d:Q14860215)
↑   ↓
ortholog (d:P:P684)
↑   ↓

Case B[سنواريو]

In some cases, Wikipedia article page is connected to Human protein data page. For example, Reelin.

Wikidata
(Gene)
Wikidata
(Protein)
Wikipedia
(Article)
Human Human gene data page
RELN (d:Q414043)
→encodes (d:P:P688)→
←encoded by (d:P:P702)←
Human protein data page
Reelin (d:Q13561329)
d:Help:Sitelinks
d:Help:Sitelinks
Wikipedia article page
Reelin
↑   ↓
ortholog (d:P:P684)
↑   ↓
Mouse Mouse gene data page
Reln (d:Q14331135)
→encodes (d:P:P688)→
←encoded by (d:P:P702)←
Mouse protein data page
Reelin (d:Q14331165)
↑   ↓
ortholog (d:P:P684)
↑   ↓

Data location[سنواريو]

The followings are list of data which are used in this template. Showing data example and data location in the case of Sonic hedgehog.

Data Wikidata
property
Data example Data location Other
Human
Gene
Page
Human
Protein
Page
Mouse
Gene
Page
Mouse
Protein
Page
Q14860072 Q2477760 Q14860079 Q14860215

Gene name Label Script error: No such module "Wd".
Aliases Aliases Script error: No such module "Wd".
HGNC gene symbol P353 Script error: No such module "Wd".
Entrez Gene ID P351 Script error: No such module "Wd".
Image P18 Script error: No such module "Wd".
Ensembl Gene ID P594 Script error: No such module "Wd".
UniProt ID P352 Script error: No such module "Wd".
EC number P591 Script error: No such module "Wd".
OMIM ID P492 Script error: No such module "Wd".
MGI ID P671 Script error: No such module "Wd".
HomoloGene ID P593 Script error: No such module "Wd".
PDB id P638 Script error: No such module "Wd".
Gene Atlas Image P692 Script error: No such module "Wd".
Gene ontology P680
P681
P682
Script error: No such module "Wd".
RefSeq RNA ID P639 Script error: No such module "Wd".
RefSeq Protein ID P637 Script error: No such module "Wd".
Ensembl Transcript ID P704 Script error: No such module "Wd".
Chromosome P1057 Script error: No such module "Wd".
Chromosome number P1813 Script error: No such module "Wd".
Chromosome length P2043 Script error: No such module "Wd".
Chromosome category P910 Script error: No such module "Wd".
Cytogenetic location P4196 Script error: No such module "Wd".
Genomic start P644 Script error: No such module "Wd".
Genomic end P645 Script error: No such module "Wd".
Strand orientation

P2548 || Script error: No such module "Wd".

Similar templates[سنواريو]

See also[سنواريو]

  • d:User:ProteinBoxBot - Enormous biomedical data in Wikidata are mostly posted and maintained by this bot